PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021617m
Common NameEUTSA_v10021617mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family SBP
Protein Properties Length: 182aa    MW: 21152.7 Da    PI: 10.0058
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021617mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.53.5e-4263138277
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      Cqv++C+a+l+eak+y+rrhkvCevh+ka++++v+g++qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk++
  Thhalv10021617m  63 CQVDRCTANLTEAKQYYRRHKVCEVHAKATAATVAGVKQRFCQQCSRFHELPEFDETKRSCRRRLAGHNERRRKSS 138
                      **************************************************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114131.56460137IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.104.1E-3260124IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.19E-3862142IPR004333Transcription factor, SBP-box
PfamPF031105.5E-3263136IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEGQRKQRWG YLKEKATVSN LDDEEMEIVM DGEEEDGGDE DRRKRIMEKV RGPSTDRVPS  60
RLCQVDRCTA NLTEAKQYYR RHKVCEVHAK ATAATVAGVK QRFCQQCSRF HELPEFDETK  120
RSCRRRLAGH NERRRKSSGD TFGEGSGRRA FSGQLIQNQE RNRVDMKFQM TNSSFKRSQI  180
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-3961136984squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00359DAPTransfer from AT3G15270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0116100.0AJ011610.1 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 5.
GenBankAJ2429600.0AJ242960.1 Arabidopsis thaliana mRNA for Squamosa promoter binding protein-like 5, (SPL5 gene).
GenBankAK1186110.0AK118611.1 Arabidopsis thaliana At3g15270 mRNA for squamosa promoter binding protein-like 5, putative, complete cds, clone: RAFL19-86-N19.
GenBankBT0037140.0BT003714.1 Arabidopsis thaliana At3g15270 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406996.11e-133hypothetical protein EUTSA_v10021617mg
SwissprotQ9S7581e-104SPL5_ARATH; Squamosa promoter-binding-like protein 5
TrEMBLV4LX601e-133V4LX60_EUTSA; Uncharacterized protein
STRINGAT3G15270.11e-102(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.12e-92squamosa promoter binding protein-like 5